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1

The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery

Alanjary, Mohammad, Kronmiller, Brent, Adamek, Martina, Blin, Kai, Weber, Tilmann, Huson, Daniel, Philmus, Benjamin, Ziemert, Nadine

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.33 MB

english, 2017

2

Genomic Insights into Specialized Metabolism in the Marine Actinomycete Salinispora

Letzel, Anne-Catrin, Jing, Li, Amos, Gregory, Millán-Aguiñaga, Natalie, Ginigini, Joape, Abdelmohsen, Usama Ramadan, Gaudêncio, Susana P., Ziemert, Nadine, Moore, Bradley S., Jensen, Paul R.

Journal:

Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 1.46 MB

english, 2017

3

Applied evolution: phylogeny-based approaches in natural products research

Adamek, Martina, Alanjary, Mohammad, Ziemert, Nadine

Journal:

Natural Product Reports

Year:

2019

Language:

english

File:

PDF, 1.12 MB

english, 2019

4

Ribosomal Synthesis of Tricyclic Depsipeptides in Bloom-Forming Cyanobacteria

Nadine Ziemert, Keishi Ishida, Anton Liaimer, Christian Hertweck, Elke Dittmann

Journal:

Angewandte Chemie

Year:

2008

Language:

english

File:

PDF, 644 KB

english, 2008

5

Innentitelbild: Ribosomal Synthesis of Tricyclic Depsipeptides in Bloom-Forming Cyanobacteria (Angew. Chem. 40/2008)

Nadine Ziemert, Keishi Ishida, Anton Liaimer, Christian Hertweck, Elke Dittmann

Journal:

Angewandte Chemie

Year:

2008

Language:

german

File:

PDF, 469 KB

german, 2008

6

Ribosomal Synthesis of Tricyclic Depsipeptides in Bloom-Forming Cyanobacteria

Nadine Ziemert, Keishi Ishida, Anton Liaimer, Christian Hertweck, Elke Dittmann

Journal:

Angewandte Chemie International Edition

Year:

2008

Language:

english

File:

PDF, 644 KB

english, 2008

7

Inside Cover: Ribosomal Synthesis of Tricyclic Depsipeptides in Bloom-Forming Cyanobacteria (Angew. Chem. Int. Ed. 40/2008)

Nadine Ziemert, Keishi Ishida, Anton Liaimer, Christian Hertweck, Elke Dittmann

Journal:

Angewandte Chemie International Edition

Year:

2008

Language:

english

File:

PDF, 475 KB

english, 2008

8

Leader Peptide and a Membrane Protein Scaffold Guide the Biosynthesis of the Tricyclic Peptide Microviridin

Annika R. Weiz, Keishi Ishida, Katharina Makower, Nadine Ziemert, Christian Hertweck, Elke Dittmann

Journal:

Chemistry & Biology

Year:

2011

Language:

english

File:

PDF, 762 KB

english, 2011

9

[Methods in Enzymology] Natural Product Biosynthesis by Microorganisms and Plants, Part C Volume 517 || Phylogenetic Approaches to Natural Product Structure Prediction

Ziemert, Nadine

Year:

2012

Language:

english

File:

PDF, 370 KB

english, 2012

10

Challenges and triumphs to genomics-based natural product discovery

Jensen, Paul R., Chavarria, Krystle L., Fenical, William, Moore, Bradley S., Ziemert, Nadine

Journal:

Journal of Industrial Microbiology & Biotechnology

Year:

2014

Language:

english

File:

PDF, 452 KB

english, 2014

11

Direct Capture and Heterologous Expression of Salinispora Natural Product Genes for the Biosynthesis of Enterocin

Bonet, Bailey, Teufel, Robin, Crüsemann, Max, Ziemert, Nadine, Moore, Bradley S.

Journal:

Journal of Natural Products

Year:

2015

Language:

english

File:

PDF, 735 KB

english, 2015

12

Molecular Networking and Pattern-Based Genome Mining Improves Discovery of Biosynthetic Gene Clusters and their Products from Salinispora Species

Duncan, Katherine R., Crüsemann, Max, Lechner, Anna, Sarkar, Anindita, Li, Jie, Ziemert, Nadine, Wang, Mingxun, Bandeira, Nuno, Moore, Bradley S., Dorrestein, Pieter C., Jensen, Paul R.

Journal:

Chemistry & Biology

Year:

2015

Language:

english

File:

PDF, 2.75 MB

english, 2015

13

The evolution of genome mining in microbes – a review

Ziemert, Nadine, Alanjary, Mohammad, Weber, Tilmann

Journal:

Natural Product Reports

Year:

2016

Language:

english

File:

PDF, 943 KB

english, 2016

14

An Integrated Metabolomic and Genomic Mining Workflow To Uncover the Biosynthetic Potential of Bacteria

Maansson, Maria, Vynne, Nikolaj G., Klitgaard, Andreas, Nybo, Jane L., Melchiorsen, Jette, Nguyen, Don D., Sanchez, Laura M., Ziemert, Nadine, Dorrestein, Pieter C., Andersen, Mikael R., Gram, Lone, T

Journal:

Year:

2016

Language:

english

File:

PDF, 1.16 MB

english, 2016

15

Salinipyrone and Pacificanone Are Biosynthetic By-products of the Rosamicin Polyketide Synthase

Awakawa, Takayoshi, Crüsemann, Max, Munguia, Jason, Ziemert, Nadine, Nizet, Victor, Fenical, William, Moore, Bradley S.

Journal:

Year:

2015

Language:

english

File:

PDF, 390 KB

english, 2015

16

Function-related replacement of bacterial siderophore pathways

Bruns, Hilke, Crüsemann, Max, Letzel, Anne-Catrin, Alanjary, Mohammad, McInerney, James O, Jensen, Paul R, Schulz, Stefan, Moore, Bradley S, Ziemert, Nadine

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 955 KB

english, 2017

17

Identification of a novel aminopolycarboxylic acid siderophore gene cluster encoding the biosynthesis of ethylenediaminesuccinic acid hydroxyarginine (EDHA)

Spohn, Marius, Edenhart, Simone, Alanjary, Mohammad, Ziemert, Nadine, Wibberg, Daniel, Kalinowski, Jörn, Niedermeyer, Timo H. J., Stegmann, Evi, Wohlleben, Wolfgang

Journal:

Year:

2018

Language:

english

File:

PDF, 3.20 MB

english, 2018

18

Assessing the efficiency of cultivation techniques to recover natural product biosynthetic gene populations from sediment.

Elfeki, Maryam, Alanjary, Mohammad, Green, Stefan J, Ziemert, Nadine, Murphy, Brian T

Journal:

ACS Chemical Biology

Year:

2018

Language:

english

File:

PDF, 3.09 MB

english, 2018

19

Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species

Adamek, Martina, Alanjary, Mohammad, Sales-Ortells, Helena, Goodfellow, Michael, Bull, Alan T., Winkler, Anika, Wibberg, Daniel, Kalinowski, Jörn, Ziemert, Nadine

Journal:

Year:

2018

Language:

english

File:

PDF, 2.82 MB

english, 2018

20

Analysis of the Genome and Metabolome of Marine Myxobacteria Reveals High Potential for Biosynthesis of Novel Specialized Metabolites

Amiri Moghaddam, Jamshid, Crüsemann, Max, Alanjary, Mohammad, Harms, Henrik, Dávila-Céspedes, Antonio, Blom, Jochen, Poehlein, Anja, Ziemert, Nadine, König, Gabriele M., Schäberle, Till F.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.91 MB

english, 2018

21

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

Blin, Kai, Shaw, Simon, Steinke, Katharina, Villebro, Rasmus, Ziemert, Nadine, Lee, Sang Yup, Medema, Marnix H, Weber, Tilmann

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 1.23 MB

english, 2019

22

AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential

Alanjary, Mohammad, Steinke, Katharina, Ziemert, Nadine

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 2.32 MB

english, 2019

23

Bioinformatische Strategien für neue Antibiotika

Ziemert, Nadine

Journal:

Year:

2019

File:

PDF, 364 KB

2019

24

Sequencing rare marine actinomycete genomes reveals high density of unique natural product biosynthetic gene clusters

Schorn, Michelle A., Alanjary, Mohammad M., Aguinaldo, Kristen, Korobeynikov, Anton, Podell, Sheila, Patin, Nastassia, Lincecum, Tommie, Jensen, Paul R., Ziemert, Nadine, Moore, Bradley S.

Journal:

Microbiology (Society for General Microbiology)

Year:

2016

Language:

english

File:

PDF, 6.75 MB

english, 2016

25

Sequencing rare marine actinomycete genomes reveals high density of unique natural product biosynthetic gene clusters

Schorn, Michelle A., Alanjary, Mohammad M., Aguinaldo, Kristen, Korobeynikov, Anton, Podell, Sheila, Patin, Nastassia, Lincecum, Tommie, Jensen, Paul R., Ziemert, Nadine, Moore, Bradley S.

Journal:

Microbiology (Society for General Microbiology)

Year:

2016

File:

PDF, 6.75 MB

2016

26

Terpenibactins A-C, New Nocobactin Derivatives with Antimuscarinic Activity, Revealed by Genome Mining of Nocardia terpenica IFM 0406.

Chen, Julia, Frediansyah, Andri, MÃ¤nnle, Daniel, Straetener, Jan, BrÃ¶tz-Oesterhelt, Heike, Ziemert, Nadine, Kaysser, Leonard, Gross, Harald

Journal:

Year:

2020

Language:

english

File:

PDF, 1.71 MB

english, 2020

27

ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining

Mungan, Mehmet DirenÃ§, Alanjary, Mohammad, Blin, Kai, Weber, Tilmann, Medema, MarnixÂ H, Ziemert, Nadine

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 1.30 MB

2020

28

Comparative Genomics and Metabolomics in the Genus Nocardia

MÃ¤nnle, Daniel, McKinnie, Shaun M. K., Mantri, Shrikant S., Steinke, Katharina, Lu, Zeyin, Moore, Bradley S., Ziemert, Nadine, Kaysser, Leonard, Savage, David F.

Journal:

Year:

2020

File:

PDF, 4.97 MB

2020

29

The genus Micromonospora as a model microorganism for bioactive natural product discovery

Hifnawy, Mohamed S., Fouda, Mohamed M., Sayed, Ahmed M., Mohammed, Rabab, Hassan, Hossam M., AbouZid, Sameh F., Rateb, Mostafa E., Keller, Alexander, Adamek, Martina, Ziemert, Nadine, Abdelmohsen, Usa

Journal:

Year:

2020

File:

PDF, 2.61 MB

2020